rs226517353 SNP Detail

Summary

• ID
  rs226517353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152055369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGAGGG CAGAGGGCAG
  GGGCAGAGGG CAGGGGCAGA GGGCAGAGGG CAGAGGGCAG GGGCAGAGCA GCAGATCGTG
  AACTCACTTT GTAGCCTTGA ATTTGTTACT TTTTTTCCTT TCCTTTTTTT TTTTTTTTTT
  TTCTTTTTGG TTATTTTGAT GGAGTCTCAT AAAGGCAAGG CAGAAACTTG CTGTGTAGCC
  Y
  AGGCTAGCCT GGAACTTGCT GTGTAGCCCA GGCTAGCCTG GAACTTGTGA TCCTTCTCTC
  TCCACTTCTG AATAGCTGGG ATTATTGGCT TGGACCACCA GTTCTGGCAG ATGGAGTCTT
  TTTGCTTGTT TGTTTTTAAT AGAAGTACAT ATGGTGAGAA CCTTATGGGT ATTATAAAAT
  CCTTCAGGCC TAATTCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360264615	MGP_WTSI_3_152012696	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226517353					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360264615	MGP_WTSI_3_152012696	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152055369 () rs orientation: forward

Symbol	Name	Function Class
Rr587536	regulatory region 587536	876 bp proximal
Tssr32407	transcription start site region 32407	1158 bp downstream
Tssr32408	transcription start site region 32408	272 bp upstream
Usp33	ubiquitin specific peptidase 33	Intron