rs226502460 SNP Detail

Summary

• ID
  rs226502460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54477869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCAAGAA GAAGCAGTCA
  GGACCTTAGA GAAAGCAGTT TTTTTACTGG CTTTCTCCTC GGCTTCTCTA AGCTTGCTTT
  CTTGTACAGC CCAGACCACT TATCCAGGCA GGTGTAGCTA CTCCCACAGT GGGATGTACC
  CTTTAATATT AATTAGAAAT CTAGAAAATG CCCTTTAGAC AAACCCATAG GCCAATCCGA
  Y
  CCAGGTAACC TCAGCTAAGG TTCCCTCTTC CGGGACGAGT TTGAGTCACG TTGACAATAA
  AAAACAACAA TATGGAGCTT CCCTGAGAAA ATGGAAAACT TGTCTCATAT GATTTGGTAG
  CTATTATGAA GCAAGTCAAA CTCTATTTCC TCTTTAATAC ATGTTTTTCT TTATGTCTAT
  GACCGCTTGC CTGCCATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771956	CHEV_3_54374370	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226502460					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54477869 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	273 bp upstream
Rr576809	regulatory region 576809	233 bp proximal
Tssr29130	transcription start site region 29130	531 bp downstream