rs226497545 SNP Detail

Summary

• ID
  rs226497545
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:19800517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGAAAGC TCTGTTTGAG
  AGTCCTATAT CTTTAAGTTT TTTTTTAAAC TACCTTTGCT TCTAAGGAGC CTGTGGGGGA
  TGGGCCAAGC CGAGAGAAAA CGGACTGTAC GTGGGAAATT TCACCCTCCT GATAATAAAA
  TAGTAATAAA ATCTCATCCG GCTCCCAGAG GGGATGTTTA TGATGGAGGG GGTTCCCCAA
  M
  ACCGGCACAG CTGCTTTCCA GGTTGTAAGG TTTCCCATCC TGCAGGGCAG CTCGGGTTAC
  CGACTCTGTG GCCTCCCGCT AGGGCAGTTC CTAAACTCCC AGGCTTTGGG AGAAACACTC
  AGTGGTTCCG CCCCGGCGCC TGGCCGCCTC ACTCCAGGCT CCAACTCAAG GGGGTCACAC
  AAAGTAGGAT TCACCGTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390453442	MGP_WTSI_14_20569671	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226497545					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390453442	MGP_WTSI_14_20569671	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19800517 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	90 bp downstream
Nid2	nidogen 2	816 bp upstream
Rr389324	regulatory region 389324	within coordinates
Rr488149	regulatory region 488149	within coordinates
Rr488150	regulatory region 488150	314 bp distal
Rr488151	regulatory region 488151	687 bp proximal
Tssr124369	transcription start site region 124369	454 bp upstream
Tssr124370	transcription start site region 124370	488 bp upstream
Tssr124371	transcription start site region 124371	512 bp upstream
Tssr124372	transcription start site region 124372	827 bp upstream
Tssr127556	transcription start site region 127556	675 bp downstream