rs226487703 SNP Detail

Summary

• ID
  rs226487703
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151898641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAAATTC TTTCCTCTCT
  AGGCAGATTG CCAAAAACAA CTAGAAGCTA AATGCCTGTG CCTTCTGCTT CTACGACACA
  CCACTCCGTC TTGTTCAGTT TCAACTAGCG TCGCTCTAAA AGGACAAAAA ACTTCTTGTT
  TTTCTAAATA AAACATAAAT GGCCCAGAAT TTGAATTGCC GATCTTAAAA TTTTAAGTGA
  A
  TGAAGATTCT ATTAATTCTG GCAATAAAAT CATTAAAAAC AAAACAGGTT GCATAAGACT
  TTTAAACAAT TCATTCACAG GCATGAGAAT TTAAGGTTTC TTTTAAAATA TAAAATGCTA
  AAACAATAAG TCTAACAGGA GAATATGAAT AATACAATAT TCTAAGAAAA AAACCCACAA
  AGACAAACAT GACATTTCAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028369	CHEV_3_151855968	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226487703					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151898641 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13944	CpG island 13944			697 bp proximal
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			969 bp upstream
Gm64624	predicted gene, 64624			32 bp downstream
Rr587481	regulatory region 587481			1463 bp distal
Rr587482	regulatory region 587482			1157 bp distal
Rr587483	regulatory region 587483			665 bp distal
Rr587484	regulatory region 587484			831 bp proximal
Tssr36163	transcription start site region 36163			719 bp downstream
Tssr36164	transcription start site region 36164			743 bp downstream
Tssr36165	transcription start site region 36165			769 bp downstream
Tssr36166	transcription start site region 36166			799 bp downstream
Tssr36167	transcription start site region 36167			829 bp downstream