rs226451627 SNP Detail

Summary

• ID
  rs226451627
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:127503415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTGTAAT ATGAAGAGGC
  GGCTCTCAAA CCTTGGTCGT AAGTTATACT AGAATCTACT ATTTACTTGA GCGTTGGTTA
  GGCACGTCGG GGTTGCTAGG TAGAGCCCGG ATGGGTTTAC CATGTTTTCG TGGCACCCTC
  TTTTCTGATG GCCAGGCCTT ACTGCTTGGA CGACTAGATA GCAAAGCCAG GAAAAGGCAG
  S
  TACCTTCTCT GAGGTCATGA GTTATTGAAC CTCTCTGGAC AGTGAAGTGG AAGCTGAGCA
  AAAGGCTAAG AGTAGTCTAC GTGACTGTCC ACCGTGGAGG ACCGCCTTCA AGGAGCCCAA
  CCCCCTCGGT TTCTTCTAGT CCCATCTGGT TCCCATTACA CGCCCACGGC TAGGAGGGTT
  GGGGGGGGGG TATTGGGCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382189894	MGP_WTSI_10_127104602	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226451627					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382189894	MGP_WTSI_10_127104602	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127503415 () rs orientation: forward

Symbol	Name	Function Class
1700012D01Rik	RIKEN cDNA 1700012D01 gene	within coordinates
Nab2	Ngfi-A binding protein 2	Intron
Rr369095	regulatory region 369095	within coordinates
Rr440991	regulatory region 440991	925 bp distal
Rr440992	regulatory region 440992	392 bp distal
Tssr96239	transcription start site region 96239	404 bp downstream
Tssr96240	transcription start site region 96240	372 bp downstream
Tssr96241	transcription start site region 96241	845 bp upstream
Tssr99813	transcription start site region 99813	923 bp upstream
Tssr99814	transcription start site region 99814	800 bp upstream
Tssr99815	transcription start site region 99815	729 bp upstream
Tssr99816	transcription start site region 99816	609 bp upstream
Tssr99817	transcription start site region 99817	37 bp downstream
Tssr99818	transcription start site region 99818	103 bp downstream
Tssr99819	transcription start site region 99819	975 bp downstream
Tssr99820	transcription start site region 99820	1326 bp downstream