rs226445319 SNP Detail

Summary

• ID
  rs226445319
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151951503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCACCTGT AATGGGATCC
  GGTGCCCTCT TCTGGTGTCT GAAGAGAGCT ACAGTGTGCT CATAAACATT AAACAATTCT
  TTGGGGGCTG GAGAGATGGC TCAGAGTTAA GAGCACTGAC TGCTCTTCTG AAGGTCCCGA
  GTTCCAGCAA CCACATAGTG GCTCACAACC ATCCTTAACG AGATCTGACG CCCTCTTCTG
  A
  AGTGTCTGAA GACTACTACA GTGTACTTAC ATATAATAAA TAAATCTTTT TTATGTTAAA
  GTGCTTTAAA TTGATTCTTC GGATAACTAT TTTACAAACA TTAACATAAT GTGGAAAGTT
  TTAACTTTTT GACAAATTAG ATATCAATAT GCAAGAAAGT ATGTTAGGGG GCTGGAGAGA
  TGGCACAGTG GATAAAAGCA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028495	CHEV_3_151908830	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226445319					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151951503 () rs orientation: forward

Symbol	Name	Function Class
Nexn	nexilin	Intron
Rr587498	regulatory region 587498	217 bp distal
Rr587499	regulatory region 587499	161 bp distal
Rr587500	regulatory region 587500	within coordinates
Rr587501	regulatory region 587501	276 bp proximal
Rr587502	regulatory region 587502	575 bp proximal
Tssr36174	transcription start site region 36174	1968 bp upstream
Tssr36175	transcription start site region 36175	1879 bp upstream
Tssr36176	transcription start site region 36176	1862 bp upstream
Tssr36177	transcription start site region 36177	1833 bp upstream
Tssr36178	transcription start site region 36178	1788 bp upstream
Tssr36179	transcription start site region 36179	1242 bp downstream
Tssr36180	transcription start site region 36180	1320 bp downstream
Tssr36181	transcription start site region 36181	1344 bp downstream
Tssr36182	transcription start site region 36182	1359 bp downstream
Tssr36183	transcription start site region 36183	1387 bp downstream