rs226434154 SNP Detail

Summary

• ID
  rs226434154
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113598980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGAAGAG GGCATTGAAC
  TCCCTAGACC TGGAGTGACA GGCAGTTGTG GGCCACCTGA TGTGGATGCT GGGGACTGAA
  CTCAGGTCCT CAGAGCAGCA CACTCTTTAA CTACTAAGCC ATTTCTTTAG TCCATAAAAC
  TGTATCTTCA ACTGCTCCAA AAGCATGACA TAAACTTCTA CTGTTCAGGG TGATTTATTC
  S
  CCAGACTTGA TAAAGGAGCC TAAATGGAAT TCAGACACCC TGCTTGATTT TTTTCCTGGC
  TCATCTAGTC ACCTTTCACA TTCTTTGTTA CAACCAAATA ACACTGCTCC TCCGAGTTGT
  CCTGTGTCCT TCCACACTAG CCTTTCAGCA TTCTGAAGGC AGAGACTGGT TCTATCACAT
  GGCCCATTCA GTAGACATGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911129	CHEV_6_113572013	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226434154					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113598980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	1652 bp proximal
Rr636555	regulatory region 636555	1562 bp proximal
Tssr58233	transcription start site region 58233	1969 bp upstream
Tssr62461	transcription start site region 62461	1509 bp downstream
Vhl	von Hippel-Lindau tumor suppressor	1975 bp upstream