rs226420142 SNP Detail

Summary

• ID
  rs226420142
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149085318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCCTGCTA AGGTGAACAA
  CCCAGACCAT AATTAAACAA AAGAAAGTCC AAGTTAAGCA CAGGTTATTT TACAAAATAA
  GTACAAAGTC ACAAATGTTT TAAAAAGCAA GTATAAACTG ATAAATGTGG GAGTCTGGGA
  GATAGATGGC TTCTACCCAA GCCTGGGAGA GTTGAGTTTG GTTCCCTGGC ACCCACATTA
  R
  AAAAAAAAAA AAAACAAAAG GCCAGGAATA AGAATGTCAT CTGTGGCCAC AGTGCTGAAA
  GGGAAAAGGA AGGAGAGAAT TTTGGAGCAG GCTGGCCCTA ACTGGTGAGC TCTGGGTTTA
  GTGAAAGCCA GCTCTAAGAA ATAAGATTGA CAGGGATAGA AGAAGACACC CATCTTTGAC
  CAGGACCCTC AGCGTGCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360192209	MGP_WTSI_3_149042645	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226420142					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360192209	MGP_WTSI_3_149042645	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149085318 () rs orientation: forward

Symbol	Name	Function Class
Gm30382	predicted gene, 30382	within coordinates
Gm64772	predicted gene, 64772	1505 bp upstream
Rr587318	regulatory region 587318	305 bp proximal
Rr587319	regulatory region 587319	1839 bp proximal