rs226371979 SNP Detail

Summary

• ID
  rs226371979
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83753325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTAAAGCA ACAGCTAAGC
  ACTGACTGTA CTTGCGACAC CGCAGGTAAT CATCTGAGAG AGCACCACCT AGTGGCTGAC
  ACAGGTAAGC TCAGAGTGCC AACAAGCCTC TTATCTCAAA CAAACTTTTT GTTTGTTATT
  TTCAGAAAGG GAGGGTCTCA TAGCTCAGGC TGGCCTTTGA ACTGTCAACT CTCCCATCTC
  S
  AGCTCTCAAT TGGTAGGGTT TCAGATGTGT GGAGTCTCCG TACTAGGGCA AAATATAACT
  TTGGTTTTGG TTTTGTCTGT TTTGATTAAG GGTCTCTATG TAGTCCTGCA ACCTGCTATG
  TAAATCAGGC TAACCTTGAA CTCACAGAGA CCAGCCTGCC TCTGCTTTAT CCCAAATCCT
  GGGATTAAAG GTGTAGAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369039087	MGP_WTSI_6_83726337	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	G	C	C	C	C	G	C	C	G	G	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226371979					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	G	C	C	C	C	G	C	C	G	G	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369039087	MGP_WTSI_6_83726337	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83753325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17617	CpG island 17617	108 bp distal
Gm52907	predicted gene, 52907	within coordinates
Rr632937	regulatory region 632937	1897 bp distal
Rr632938	regulatory region 632938	653 bp distal
Rr632939	regulatory region 632939	448 bp distal
Rr632940	regulatory region 632940	within coordinates
Rr632941	regulatory region 632941	121 bp distal
Tex261	testis expressed gene 261	530 bp upstream
Tssr1911	transcription start site region 1911	402 bp downstream
Tssr57375	transcription start site region 57375	692 bp downstream
Tssr61705	transcription start site region 61705	774 bp upstream
Tssr61706	transcription start site region 61706	763 bp upstream
Tssr61707	transcription start site region 61707	746 bp upstream
Tssr61708	transcription start site region 61708	728 bp upstream
Tssr61709	transcription start site region 61709	667 bp upstream
Tssr61710	transcription start site region 61710	584 bp upstream
Tssr61711	transcription start site region 61711	517 bp upstream