rs226365000 SNP Detail

Summary

• ID
  rs226365000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88785138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCGAAGT ATTAATCCCA
  GCCTTGTGGC TCCTTTAAAG TACAGCCACG TGCCCCGAGT AGATGTGTTT AAGGACAGAA
  GACACCAGAG ATCATTTACC AGGAGCCAGC AGGCTCTGCT GTAAGTTACA CAACAGTGAG
  CAAAAATCTC ATTCCAAGAA AGTTTCTTGA TGCAGGTAGT GTATTAAATC CCTAAATTTG
  R
  AATGCTGAGG AGGGAGGGGA GGATTTCTGA AAGTTCTAGG TCAGCTGGAG ATGTTGAGGA
  AGATGTTGAT TTTTAAAAAA GATACCACCC AACAACAATA TAAGTCCCCA ACTAAACACA
  GAAACCTGTT ATGGTGAGAA TTCTAGGTAA AAGGGGAGGT GAGAATGAGG ACCCAAAGCT
  TCTCATAGGC CAAGAAGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362333887	MGP_WTSI_4_88512805	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226365000					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362333887	MGP_WTSI_4_88512805	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88785138 () rs orientation: forward

Symbol	Name	Function Class
4930553M12Rik	RIKEN cDNA 4930553M12 gene	332 bp downstream
Cpgi14432	CpG island 14432	1173 bp proximal
Gm69755	predicted gene, 69755	1545 bp upstream
Rr376804	regulatory region 376804	1953 bp downstream
Rr398331	regulatory region 398331	325 bp upstream
Rr595125	regulatory region 595125	1416 bp distal
Rr595126	regulatory region 595126	376 bp proximal
Rr595127	regulatory region 595127	637 bp proximal
Rr595128	regulatory region 595128	1469 bp proximal
Rr595129	regulatory region 595129	1556 bp proximal
Tssr37771	transcription start site region 37771	1573 bp upstream