rs226346187 SNP Detail

Summary

• ID
  rs226346187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139972443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCAGCTC CTCCCCCACT
  GCCTACAGGA CCACCTCCCA AGGCTCAAAT TCTCCCATCA GCGGACCAAG CTCTCTCTTC
  AAAGACTCAG GCGGTCGGAG GGTGTAGGTT ATTTTAGAGG CACGCCCCTT GGAGGACAAT
  TTCAGAGCTC ATATAGGTTT TTCTCAGTTT GCGGGACAAG AATTGACCCT CCACCGCGGC
  Y
  TAAATGGGAC AGAGGCCAAG GCTCCATCCG AGACAATGCC TACTTTTTCC ACTCTCCCAC
  CTCCCAGGGT GGCCACGCTC TGATTTCAAC ACCGGTGGTT GGTTGTGACT TGACCTGGAG
  AAGGAGCTTC CCCCACCCCC TACCCCCACC CCCGCCCCCA CCCTCTGGAA TCCCCCACCT
  ATGACTCTGT TGGCCCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363487590	MGP_WTSI_4_139801047	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226346187					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363487590	MGP_WTSI_4_139801047	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139972443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15189	CpG island 15189	1500 bp distal
Cpgi15190	CpG island 15190	303 bp distal
Cpgi15191	CpG island 15191	686 bp proximal
Gm69798	predicted gene, 69798	1272 bp upstream
Gm69835	predicted gene, 69835	1787 bp downstream
Igsf21	immunoglobulin superfamily, member 21	Intron
Rr603404	regulatory region 603404	914 bp distal
Rr603405	regulatory region 603405	283 bp proximal
Rr603406	regulatory region 603406	1642 bp proximal
Tssr44245	transcription start site region 44245	1619 bp downstream
Tssr44246	transcription start site region 44246	1662 bp downstream
Tssr44247	transcription start site region 44247	1786 bp downstream