rs226319683 SNP Detail

Summary

• ID
  rs226319683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127763601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATAGCCGA AGGGAAGTGG
  GGGAAGCCAC ACACAACAGA TAGACTCAGT TTTCCAGTCA TACACTTGGT CGTAATGTTC
  TTGTCAGAGT TGAACTTGTT TATGTGTGCT CCTTAAACGC CAATGTCAGA GCCCCAATCA
  GAGATGCAGA AAACAAGACA AGCAAGGCCT GTTAAAAGCA GGTGCGTATT ATATGTGTAT
  R
  TTGGGGAGCG TTTATTTCCT TATTGGATTT TCAGTGGCCG TTGTGAACAC AGTGAAAAGC
  ACGTCTCTAA TGTGACTTTG GAGGAATCCC ATTTCTTCAT TAACTGAGCA TTGAGAACAA
  AATACGGGGA CCCCCCCCCC CCCCCGAGGT TAGGCTACAG TGTGAGCCAG GCAGAATAAA
  GAAGTTTTTC CTTCCTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320958794	CHEV_3_127672870	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226319683					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127763601 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	969 bp upstream
Gm65460	predicted gene, 65460	833 bp upstream
Rr52	regulatory region 52	29 bp proximal
Rr584913	regulatory region 584913	1022 bp proximal
Rr584914	regulatory region 584914	1122 bp proximal