rs226276958 SNP Detail

Summary

• ID
  rs226276958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134000656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATACCAGG TTGAACAGGA GAAGAAAATT
  TCAAAGCCCA GGGCTACTcc ctcccctccc ctcccctcct ctcccctccc ctcccctccc
  ctcccttccc TCCTCTTCTt ctttctctct ctctctctct cctttctctc tctctctcgt
  Y
  cttctttctc tctctctcct tcttctttct ctttctctct ctctctcAAG CAATTCACTT
  CTAACCAATG GAAACTCTTT GCCTAGGTGG AAGTACCACC TTTAAAAAAC GCGTTTCACC
  TTCTAGAGGT GTGGCCTCTG TAGGCTTTTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321346316	CHEV_4_133829260	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226276958					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134000656 () rs orientation: forward

Symbol	Name	Function Class
Gm69734	predicted gene, 69734	284 bp upstream
Pdik1l	PDLIM1 interacting kinase 1 like	1657 bp downstream
Rr398573	regulatory region 398573	15 bp upstream
Rr601619	regulatory region 601619	within coordinates
Rr601620	regulatory region 601620	113 bp proximal
Rr601621	regulatory region 601621	295 bp proximal
Rr601622	regulatory region 601622	305 bp proximal