rs226236980 SNP Detail

Summary

• ID
  rs226236980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129998333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCATCCT CCCAAGGGCT
  GGAGGATGAG GCTTTTTTAA ATAAATAAAT ATAAATATAT ATATATATAT ATATATTTTT
  TCAGGAATGG GTTTTTTTTG TACAGCCTTG GCTGTCCTAA AAGTAGCTCT TTAGACCAGG
  CTGGCCTCCA ACTCACAGAG ATCTGCCTGC CTCTGCCTCC CAAGTGCTGG GATTAAAGGT
  R
  TGCACTACCA CTGCCTGGCT GGCATCAGGC TCTTACAATG TCCTGTTCTA GACCATGAGA
  GTGGCACCTA GAAACCTCTA ATCATTGTTT AAGCTTGAAG AGACCAGCTA ACTCCATCTT
  GTCTTCCTGA CTTGTTCTGA GTCATGCTCT CTGGCAGTTA CTGTGGATTC CAGGAATTAC
  AGGTCTGACT GATAAACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317090	CHEV_4_129781784	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226236980					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129998333 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	915 bp downstream
Rr600439	regulatory region 600439	1972 bp distal
Rr600440	regulatory region 600440	1473 bp distal
Rr600441	regulatory region 600441	699 bp distal
Rr600442	regulatory region 600442	within coordinates
Tssr39229	transcription start site region 39229	346 bp upstream