rs226230558 SNP Detail

Summary

• ID
  rs226230558
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:103240942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAAAGTT AGTTCTGTCG
  TAGTTTCTAG TATGTTTGCC AGTTTGTTCT GCTATCACCT CTAATTCTCC GTGTTTTCAT
  GGTTTCAAAA ATATAACATT GGCTTCATTT CCTATTTTCT TTTATTCTGA CTCCTGTGTC
  ATACTCTGAA CTTTTTTTTT TTTTTTTTGG TACATAAAAT ATGTGACCTT TTATGCCTGC
  M
  CTTTCTTCAC TTAGTCTATA GGTATGTCTA TTATAACTTA ATTATTTCTA TGGCTGCATA
  ATATTTCATT GTATAGAGTT CTCTTTCTTT TTTCTTCTTT TGAAGAAAGG GACTTGAAGT
  GTAGTCTGGT CTAGAGTCCA CTGTGTAGCT CAGGCTGGCT CAGACTAATT TTGTACTTCA
  CGCTCACATG GTAGGATTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320856922	CHEV_3_103137549	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226230558					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103240942 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43061	predicted gene 43061			within coordinates
Rr582347	regulatory region 582347			1952 bp proximal
Trim33	tripartite motif-containing 33			Intron
				Noncoding-Transcript-Variant