rs226226209 SNP Detail

Summary

• ID
  rs226226209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132243742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaaacaaaa ACAAAAAAAG AGGCCCTCAA
  GCATGGCATG ATAATGGTTG TTGAAGGCCA CACTGGGCTA CAGAGTGATT TATCTCGGAA
  ACTCAGTAAG TGCTAGTATC AAaaataaat aaataagtaa ataaacaagt aagtaagtaa
  R
  taaataaata aataaaAAGT GAAAGAGAAG CCTGTTTGTT GTTTAAAGAA CAGAAAGGAA
  CAACTATTGA TTTCCCTACT TTAGTCCCCT GAGTAGGTGG CTTTCCAGAG ttgttttttg
  tttgtttgtt tgtttgtttg tttgtttttc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321333976	CHEV_4_132072346	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226226209					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132243742 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	352 bp downstream
Rr377207	regulatory region 377207	116 bp downstream
Rr600995	regulatory region 600995	1642 bp distal
Rr600996	regulatory region 600996	1141 bp distal
Rr600997	regulatory region 600997	1480 bp distal
Rr600998	regulatory region 600998	403 bp distal
Rr600999	regulatory region 600999	1343 bp proximal
Tssr39372	transcription start site region 39372	603 bp downstream
Tssr43681	transcription start site region 43681	997 bp upstream