rs226168428 SNP Detail

Summary

• ID
  rs226168428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82051326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTAGTGT ATACAGTTTC
  CTCACCCTCC TGCTCCTCAC CAGCATTTGA AATGTTTAGC TATTGTATGT AGCACAACCC
  TTGAAGTCTT CTGCTAGTCT GCATCCACAC CCTTTTGTAC AGAGGCTAAG ATTCGGACCA
  GAAAATGTTC AGCTTATCGG TGTTAACTTC TGTCGTTATT TTGCTGTGGG GTTCTAAATG
  Y
  CAGTACTGCA GCGGAGTTTT TTCCATCTCC CTAAAAGTGC AACAGCTCAA ATATTTGAGT
  ATAGTTTCTG AGACTACAAG ACTCCTCAAA TAAATACATG GACCAGACCA TTTAATAATC
  GGTAAAGGCC AAGTACTAGA GTTGCTTCAG AACTCCAGTT TCATGTCATC GTCCTTTGCC
  ACCCTTGATC ACTGCTACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358653249	MGP_WTSI_3_81947941	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	T	T	T	C	C	C	T	T	T	C	T	T	T	C	C	T	C	C	C	T	T	C	C	T	C	C	T	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226168428					SNP	T	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	T	T	T	C	C	C	T	T	T	C	T	T	T	C	C	T	C	C	C	T	T	C	C	T	C	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358653249	MGP_WTSI_3_81947941	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82051326 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13288	CpG island 13288			853 bp proximal
Gucy1a1	guanylate cyclase 1, soluble, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr578750	regulatory region 578750			615 bp proximal
Rr578751	regulatory region 578751			1044 bp proximal
Rr578752	regulatory region 578752			1758 bp proximal
Tssr33784	transcription start site region 33784			1719 bp downstream
Tssr33785	transcription start site region 33785			1739 bp downstream
Tssr33786	transcription start site region 33786			1846 bp downstream