rs226084868 SNP Detail

Summary

• ID
  rs226084868
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117152875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGG GTGGGGAAAG TATCTGGTTT
  W
  CTTTGATAAA TTGCTTGTGA ACCAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss641191350	FVB_NJ_6_117125932	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	A	T	A	T	T	T	T	T	A	T	A	T	T	T	T	A	T	A	T	A	T	T	T	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226084868					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	A	T	A	T	T	T	T	T	A	T	A	T	T	T	T	A	T	A	T	A	T	T	T	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss641191350	FVB_NJ_6_117125932	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117152875 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637289	regulatory region 637289	1590 bp distal
Rr637290	regulatory region 637290	1842 bp distal
Rr637291	regulatory region 637291	1791 bp distal
Rr637292	regulatory region 637292	429 bp proximal
Tssr58409	transcription start site region 58409	1985 bp downstream
Tssr58410	transcription start site region 58410	1967 bp downstream
Tssr58411	transcription start site region 58411	1936 bp downstream
Tssr58412	transcription start site region 58412	1924 bp downstream
Tssr58413	transcription start site region 58413	1900 bp downstream
Tssr58414	transcription start site region 58414	1878 bp downstream
Tssr58415	transcription start site region 58415	1860 bp downstream
Tssr58416	transcription start site region 58416	1842 bp downstream
Tssr58417	transcription start site region 58417	1788 bp downstream
Tssr58418	transcription start site region 58418	1762 bp downstream
Tssr58419	transcription start site region 58419	1742 bp downstream
Tssr58420	transcription start site region 58420	1707 bp downstream
Tssr58421	transcription start site region 58421	1683 bp downstream
Tssr58422	transcription start site region 58422	1670 bp downstream
Tssr58423	transcription start site region 58423	1649 bp downstream
Tssr58424	transcription start site region 58424	1590 bp downstream
Tssr58425	transcription start site region 58425	1551 bp downstream
Tssr58426	transcription start site region 58426	1533 bp downstream
Tssr58427	transcription start site region 58427	1499 bp downstream
Tssr58428	transcription start site region 58428	1488 bp downstream
Tssr58429	transcription start site region 58429	1410 bp downstream
Tssr58430	transcription start site region 58430	1379 bp downstream
Tssr58431	transcription start site region 58431	1280 bp downstream
Tssr58432	transcription start site region 58432	1199 bp downstream
Tssr58433	transcription start site region 58433	1174 bp downstream
Tssr58434	transcription start site region 58434	727 bp downstream
Tssr62622	transcription start site region 62622	1622 bp upstream
Tssr62623	transcription start site region 62623	1602 bp upstream
Tssr62624	transcription start site region 62624	1456 bp upstream
Tssr62625	transcription start site region 62625	1317 bp upstream
Tssr62626	transcription start site region 62626	1252 bp upstream
Tssr62627	transcription start site region 62627	1207 bp upstream
Tssr62628	transcription start site region 62628	1075 bp upstream
Tssr62629	transcription start site region 62629	895 bp upstream