rs226040452 SNP Detail

Summary

• ID
  rs226040452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71698536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAATAA ATAGAATTTT
  AAAAAAGGAT TATATAAAAC ATCCCACATA GATGAGTAAC ACAGCTCTTT TTTAATGTCC
  TCTTCAGCAC CAGGACTTCT TAAGTTAGAA ACAAAAAGGT AAGATGAGGG GACAGGGAGA
  AGGAAGGAGA GAGAATGTGA CAGACTATGT ATGATCTTAC TTGCTCATTC TCTATATGTC
  Y
  GTGGAGGGTT GGGAAAAGAG AAACAGCACT TTATAAAACA GGTGATGGGT TGGTGAGATG
  GTAAGGGTAA AAGCTGTCTC CAGGCTGTTG TGGGTTGGTC TAGTGCTATG TATACAAATG
  CTAAATTCTG AACCCTAAGA TCTGGTTGCT CCCATATGAG TGAATACAAG CCTTTGTTGT
  GTGAGCCTTG CTCCCCAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354425613	MGP_WTSI_2_71706249	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226040452					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354425613	MGP_WTSI_2_71706249	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71698536 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	640 bp upstream
Gm75575	predicted gene, 75575	288 bp upstream
Rr370575	regulatory region 370575	within coordinates
Rr558852	regulatory region 558852	1954 bp distal
Rr558853	regulatory region 558853	651 bp distal
Rr558854	regulatory region 558854	225 bp distal
Tssr18293	transcription start site region 18293	433 bp downstream
Tssr18294	transcription start site region 18294	315 bp upstream
Tssr18295	transcription start site region 18295	322 bp upstream
Tssr24499	transcription start site region 24499	608 bp upstream
Tssr24500	transcription start site region 24500	114 bp downstream