rs226023813 SNP Detail

Summary

• ID
  rs226023813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22032566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAACATG GGCTCCTTAC
  TGTGAAAACA GCACTGAAAC AATGTCTCTC CAGATCCTGA ACCATTAATT AACTTATTAA
  CTAATACAGA TGGATTCTCA GGGATTGACG AGTCTCATAT GCACTCCAAA AGGTAACACA
  TTTCAAAATG ACTGTGGAGT GTAATAGCCA GTTATGATAT CATTAGCAGC AATGTACTAC
  R
  GAGGCTTGGT GATGGGAGTT CACAGGTTCT TCTAACAGAA ATGCCACGTT ATAGCAATAT
  TTAAAGAGAC TGGTAAATAT AAGCTATGTG CTGTGTAGTT TCATGTCAAC TTGATGTAAG
  GTAAAATCAT ATGTGAGGAG AGACCCTTGG TTTTAAAATG CTTCCATAAG ATAAGAATGG
  AAACAAGCCT ATAGGGCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss379693968	MGP_WTSI_10_21876473	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs226023813					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379693968	MGP_WTSI_10_21876473	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22032566 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	1732 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	1942 bp upstream
Raet1e	retinoic acid early transcript 1E	1875 bp upstream
Rr428833	regulatory region 428833	1412 bp proximal
Rr428834	regulatory region 428834	1930 bp proximal
Tssr92677	transcription start site region 92677	1728 bp upstream
Tssr92678	transcription start site region 92678	1802 bp upstream
Tssr92679	transcription start site region 92679	1854 bp upstream
Tssr92680	transcription start site region 92680	1899 bp upstream