rs225965176 SNP Detail

Summary

• ID
  rs225965176
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:62742384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAATTG CTTAAGAGTT
  TATATCAAGT CCCCAAATGG AGGCTGACTC TGTTCTCAGC CCAGATGACA TTGAACAGCA
  GTGGTAAGAA GCAGGCTGTT ACCATTCAAC AGCCTTGAGT TTGAAGTCAA AGGGTCTGTG
  GACACCCCCA CCCCCTTCAT TTGCCTGCAT AGCTTGTGTG GGCGGGCAGT CCTTTTACCT
  S
  TGGGATTAGT TTTTTTCATT TTAAAATTAA ACACGTATTT TCAATTATGT ATGGGGGGGG
  TCACATGTGT GAGTACAGTT GTCCACGGAA TTCAGAAGAG GGCATCAGAT CCTCTGCAGC
  TAGACTTATA GGTGACTGTA AACCCCCAAC ATGGTTTTGG AGAAATGAAC TCAAGTCCTC
  TGAAAGAGCA ATGCATGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321143505	CHEV_4_62485181	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225965176					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62742384 () rs orientation: forward

Symbol	Name	Function Class
Rr593425	regulatory region 593425	1240 bp distal
Rr593426	regulatory region 593426	1361 bp distal
Rr593427	regulatory region 593427	267 bp distal