rs225919857 SNP Detail

Summary

• ID
  rs225919857
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:63945742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGGAAGA TTCAATGTGT
  CCAGCTGCCA ACTGTTCCTG CACTAACTCT ATGGCTGCCG ACAATTTTTT TGCAGGAAGG
  AACCATTGGT CAAGCCAGAC AGGGGTGTCA TCTTTCCATG TAATTTTATC TGTCTGGCAT
  GCAGGGAGAG CAATGGTCCT TATGAAAAAT GGGAGTTGTA ACCTAAGCCT GCATGATCGA
  C
  CTTGGGAGGG ATTTCGATTG GCTCAGGCCT CCCTTGTCCA AATTTACCTA GTCCCTGTCC
  AGGGAGATAA CCCTGGGTGA GCATTTGTTG AGTAATGACT TCATTGGGAC TGCACATAAT
  GACTCTCATT TGAGAGAGAA TATCTCTCCC CCACAAATTA ATAGGCAGAC CCGGGACAAC
  ATAAGGCTGA ATAGAGCCAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358213181	MGP_WTSI_3_63842243	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225919857					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358213181	MGP_WTSI_3_63842243	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63945742 () rs orientation: forward

Symbol	Name	Function Class
Rr577614	regulatory region 577614	1302 bp proximal
Rr577615	regulatory region 577615	1578 bp proximal
Tssr29383	transcription start site region 29383	978 bp upstream