rs225914323 SNP Detail

Summary

• ID
  rs225914323
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132650384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGATGAAGT TGTGATGTTT
  TGGGTTGCCG TGGAGCTTCC CGCTAGCCGA AGGAGTGTGG GATTGGGGTG ACAGTCGGGC
  AACGTCGGAT TCGAACTACG AGACCATCCG GAGTTTAAAC CCACTGGCAA CCAAGGAGGA
  AAGTCTATCT TTGGAGCAGG CGGAGGGGAA AAGCAGGATA TTAAATGAGT GTCCTCTATG
  S
  GCTGGAGAGA AGGCTCCGAA TGCTGCTTTT GCAAAGTTTG GTTCCCAGCA CCCACATCTG
  GAGGCTCAGA TCGCCTGTAA CTCCAGCTGC AGGGCTATCC CTGATGCCTC TTAACTCAGC
  AGGCACCTGC ACTCACGTGC ACTTACAAAA GATGGGCAGT TGTAAAATGG TAAAACAGTA
  GAGACCTGAA GCTAGAATTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363304722	MGP_WTSI_4_132478988	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225914323					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363304722	MGP_WTSI_4_132478988	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132650384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14977	CpG island 14977	within coordinates
Fam76a	family with sequence similarity 76, member A	535 bp upstream
Gm69717	predicted gene, 69717	within coordinates
Rr398546	regulatory region 398546	93 bp downstream
Rr601111	regulatory region 601111	591 bp distal
Rr601112	regulatory region 601112	25 bp distal
Rr601113	regulatory region 601113	550 bp distal
Rr601114	regulatory region 601114	324 bp distal
Tssr43726	transcription start site region 43726	1926 bp upstream
Tssr43727	transcription start site region 43727	529 bp upstream
Tssr43728	transcription start site region 43728	510 bp upstream
Tssr43729	transcription start site region 43729	472 bp upstream
Tssr43730	transcription start site region 43730	460 bp upstream
Tssr43731	transcription start site region 43731	447 bp upstream
Tssr43732	transcription start site region 43732	442 bp upstream