rs225912411 SNP Detail

Summary

• ID
  rs225912411
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113600103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAGTCTG CGTCTAAAAA
  GAAAAAGACA AAATATTTTA AAATTCTATT CACAAACATA AAAAAGTTTG AAAGGAAACA
  AAAACTGGTA ATACTGTTTT CTGGGAATGC AGATGGAAAA GGAGGGAAAG TTTTACTTTT
  GTACTCTGGA AGACATTTTG AAATGTGTAG TTAAAAATAG AGACAGACTC AAACTCATCA
  R
  TGAGAAAAAC TTTAAATAAT AGCATAGGTG GGCCCGGCAG CGGTGGTACT CAGCTTTTAT
  ATCAACACTT GGGAGGCAGA GGCAGGAGAT TGGAGGTCAG ACTGGTCTAC AGAGTGAGTT
  CCAAGAGAGC TGGAGCTACC CAGAGAAACC CTGTCTTGAA AAACCAAAAA GCAAAGGCAG
  AAGGGGAAAT ATGGCAAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911146	CHEV_6_113573136	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225912411					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113600103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	529 bp proximal
Rr636555	regulatory region 636555	439 bp proximal
Tssr58233	transcription start site region 58233	846 bp upstream
Tssr58234	transcription start site region 58234	906 bp upstream
Tssr58235	transcription start site region 58235	984 bp upstream
Tssr58236	transcription start site region 58236	1525 bp upstream
Tssr62461	transcription start site region 62461	386 bp downstream
Vhl	von Hippel-Lindau tumor suppressor	852 bp upstream