rs225840607 SNP Detail

Summary

• ID
  rs225840607
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75846178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGACAG CAGTGAGCTC
  TGAGCATCCG CTCATGAGCA AGTTTCTCCA CGGTCCCCTT TAGGGTGACA TGGCTTTTTT
  TTTTTTTTTA AGATTTCTTT ATTATGTATA TGGCATTCTG CCTACAAGTA TGCCTGCTGG
  CCAGAAGAGA GCACCAGATC TCATTATAGA TGATTATAAG CCACCATGTG GTTGCTGGGA
  W
  TTGAACTCAG GATCTCTAGA AGAGCAGGCA GTGCTCTTAA CCGCTGAGCC ATCTCTCCAG
  CCCTGACATG GCTTTTGATA GAAACAAACA AACAAACAAA CAAACAATGG GGAGAAAATT
  TCATCAGAAG TAGGAATTGG GCAGCTGGAA AGTTGCCACG CTAATGCAAA GGTCGAAGCT
  GACTGAAAAG GACAGAATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320352401	CHEV_2_75853891	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225840607					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75846178 () rs orientation: forward

Symbol	Name	Function Class
Gm75271	predicted gene, 75271	within coordinates
Pde11a	phosphodiesterase 11A	Intron
Rr559634	regulatory region 559634	1061 bp proximal