rs225840503 SNP Detail

Summary

• ID
  rs225840503
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138172789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAACAGTGT CAGAGGATCT CAGTTGCTTT
  CAAAGCTCTC ACGAAATAAA ACCTAGCCTT CCTCTCTATT ATGGCCCCCA AAGAGATCTG
  TCATACCTCA AATTTAATAG AGGACCATGC CAGTAATTAC AAAGCATGCT AGTAGAAAGA
  R
  CTAAATATCC AGTAACAATT TGCAAAGCCC TATTTTGAAC CATAACAACA CATATGATAA
  TAATCATTAA TGAAACTCTT ATTCCATAGT AACTCGATAC TCTGGTCTCA AATCGGAGTA
  TTTATCACAA GCTAATTGTT CCTTAAATAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320000288	CHEV_1_140141628	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225840503					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138172789 () rs orientation: forward

Symbol	Name	Function Class
Gm53479	predicted gene, 53479	within coordinates
Rr419685	regulatory region 419685	899 bp distal
Rr419686	regulatory region 419686	768 bp distal
Rr419687	regulatory region 419687	251 bp distal
Rr419688	regulatory region 419688	498 bp proximal
Rr419689	regulatory region 419689	1435 bp proximal