rs225811551 SNP Detail

Summary

• ID
  rs225811551
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14939092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAATTGC ACCTCAGGCA
  GTAGAGCTTG TAGAGCAGTT TGCCATGAGC TGCCATCTAA AATGGCTCTG GAACCCGTCA
  GCCTTATTCT TCTGGGTATA ATTGCAGGTA TCTTAGCATT TCAAAGTGGG GAGAAGCCAA
  TGGTCAGATA ATGGTGTGCT TGAAAGCCTG CAGGGAGGAT GGCAGCAGGT GGTAGGCTGA
  B
  GGGTGCAAAT ACTTTCTAGT TCCTACATTT ATAAATTATT ATAGAACTGG GGACTCCAAT
  GTAAAACATT TCAAAATTCA AATAACTGAC TCATTTCGTA GACAAGTGAG AACTATTCTA
  CGTAGACAGT GTATGTGTAG ACAGCTACAG TTCTCAGCAT CTAACTGGGG CCATTTATGT
  CATTAAACAA ATCTTATTGA                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357060629	MGP_WTSI_3_14874032	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225811551					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357060629	MGP_WTSI_3_14874032	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14939092 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	1651 bp downstream
Rr374551	regulatory region 374551	1652 bp upstream
Rr397608	regulatory region 397608	370 bp upstream
Rr573714	regulatory region 573714	437 bp proximal
Rr573715	regulatory region 573715	533 bp proximal
Rr573716	regulatory region 573716	1076 bp proximal
Tssr28459	transcription start site region 28459	1964 bp downstream
Tssr28460	transcription start site region 28460	1878 bp downstream
Tssr28461	transcription start site region 28461	1822 bp downstream
Tssr28462	transcription start site region 28462	1785 bp downstream
Tssr28463	transcription start site region 28463	1734 bp downstream
Tssr28464	transcription start site region 28464	1693 bp downstream
Tssr28465	transcription start site region 28465	1554 bp downstream
Tssr32654	transcription start site region 32654	1495 bp upstream