rs225788257 SNP Detail

Summary

• ID
  rs225788257
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150272189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GAGACAGAGA GAGAAAGAGA
  T
  ATAGAGACAG AGAAACAAAG AGAGA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321428600	CHEV_4_149561841	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225788257					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150272189 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605217	regulatory region 605217			1198 bp distal
Rr605218	regulatory region 605218			991 bp distal
Tssr40380	transcription start site region 40380			313 bp downstream
Tssr40381	transcription start site region 40381			291 bp downstream
Tssr40382	transcription start site region 40382			282 bp downstream
Tssr40383	transcription start site region 40383			264 bp downstream
Tssr40384	transcription start site region 40384			1411 bp upstream
Tssr40385	transcription start site region 40385			1466 bp upstream
Tssr44720	transcription start site region 44720			335 bp upstream
Tssr44721	transcription start site region 44721			1419 bp downstream
Tssr44722	transcription start site region 44722			1453 bp downstream
Tssr44723	transcription start site region 44723			1503 bp downstream