rs225774989 SNP Detail

Summary

• ID
  rs225774989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:31364652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAGATTG AAACCCCTCC
  GCACCCCTCC CGCGCCTGCC AGTTTGCTCT CCAGCTTGCC TATCTCCGCC TCCTTGTAAT
  CACGTGGCTA ACCCAGCCCT TTCCATTACC GAGTCCTAGC ACCACTCCCG CCGCCCCTTC
  CCGCACCCCC CCGCCCCCCC ACCCCGCCCC CCGGGTCTGT CACTCACTAC ACCTCACCCG
  Y
  CTTCCAGGTG CGGCCTCCAG CCTCTGCTAC CTTTCTGGTG CTTGGAGCAG AGGAGCCCGG
  GCAGTTCTAT GCTCTGGGAA GGCAGGGTGG GGTAGGACTC TGCAGTGTCG CTGTACTGTT
  TGGGCTGGCT TCTGCCAACA GCTCCACCTC TCCTGGATTC AGCTACCCAG CCAGGCCTGC
  TTCCTGCTCG CTGGAAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357438464	MGP_WTSI_3_31209425	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225774989					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357438464	MGP_WTSI_3_31209425	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31364652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13053	CpG island 13053	111 bp distal
Gm15496	predicted gene 15496	within coordinates
Rr574907	regulatory region 574907	136 bp distal
Rr574908	regulatory region 574908	43 bp distal
Rr574909	regulatory region 574909	within coordinates
Slc7a14	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	mRNA-UTR
Tssr32914	transcription start site region 32914	272 bp upstream
Tssr32915	transcription start site region 32915	238 bp upstream
Tssr32916	transcription start site region 32916	179 bp upstream
Tssr32917	transcription start site region 32917	130 bp upstream