rs225745250 SNP Detail

Summary

• ID
  rs225745250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77646653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTCT ATCTCTATGC TCCCTTCCCA
  Y
  CCTGGCTTCT CCGAGCCCAC CCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320358143	CHEV_2_77654366	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225745250					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77646653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11837	CpG island 11837	within coordinates
Rr559844	regulatory region 559844	within coordinates
Rr559845	regulatory region 559845	497 bp proximal
Rr559846	regulatory region 559846	679 bp proximal
Rr559847	regulatory region 559847	748 bp proximal
Tssr24865	transcription start site region 24865	284 bp downstream
Tssr24866	transcription start site region 24866	371 bp downstream
Tssr24867	transcription start site region 24867	401 bp downstream
Tssr24868	transcription start site region 24868	427 bp downstream
Tssr24869	transcription start site region 24869	449 bp downstream
Tssr24870	transcription start site region 24870	570 bp downstream
Tssr24871	transcription start site region 24871	1116 bp downstream
Tssr24872	transcription start site region 24872	1182 bp downstream
Tssr24873	transcription start site region 24873	1359 bp downstream
Zfp385b	zinc finger protein 385B	Intron