rs225689828 SNP Detail

Summary

• ID
  rs225689828
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79105202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGAAGGG CATGTCACTG
  CTGGGGCAGG ATTAAGTCAC TAGAAAGAAA GGAAATGAGT CACCACTCTT CGCAGCTGGG
  GGCGGCCTGG GGAGAGTGTC GAGATAAGGA TACAGGAACT AGGGACAATG GCGGGAAGTG
  AGAGGAATGT GGGCCCAGGA CAGCCTTCAG TACCCTCTGC ACCCTGGACC AGCAAGGGAA
  T
  CCTCCGAGGG AGGCAATAGG GGTGGGACGG GCTGAACCTT GGGTTGTTGG AAGAGAATGG
  GACAGAGGAC AGCCCAGGGC GCCCATATCA TCTTTCCCAC ATCCATTGAA CTTCCTAAAA
  ACCTTAGCTA GACTTCCTGA GAACTCCTGT AAGGCCCTTA GCATAAGACA CAAACTGTAA
  GAACACCCCA ACACTCGCCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759323	CHEV_11_79027878	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225689828					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79105202 () rs orientation: forward

Symbol	Name	Function Class
Gm11200	predicted gene 11200	1133 bp downstream
Gm74268	predicted gene, 74268	217 bp downstream
Rr402771	regulatory region 402771	8 bp downstream
Rr452198	regulatory region 452198	within coordinates
Rr452199	regulatory region 452199	233 bp distal