rs225688067 SNP Detail

Summary

• ID
  rs225688067
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124922306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGGGGTT TGGTCAACAG
  ACATCCTCAC TGTCCTGAGA GCTGAAAGTC CAAGGCCTAC AGGTGAGAAG GCTGTTTTCC
  CCTCAGGCTG GTGACTGCCC TCTAATGCCC TGGGACACTG TTCCTCTGTG TGTGTGTTTG
  TATCCTGATC TCTTCCAATG AGAACCCCAG TCACCCTGGA TTAGGGGGTA CCCCAAGGAC
  Y
  TCACACTAGC AGACAATTCC TGCAAAGACC CCGTCTCCAA ATACAGTCAC ATTCTAAGCT
  CCTGAAGGCT CAAGCCTTCA GCATGCGAAC CTCAGGGAGA CATCATTCGG CCCATAACAC
  CCCATTTCTC AGATGGTGAG ACTGAGGCAA AAAGCACACA AATCACACAG TGTTTTGACC
  CAAGCAAACA GTCCCAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322856623	CHEV_8_126719467	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225688067					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124922306 () rs orientation: forward

Symbol	Name	Function Class
Gm42054	predicted gene, 42054	986 bp upstream
Rr672636	regulatory region 672636	551 bp proximal
Rr672637	regulatory region 672637	1294 bp proximal
Tssr80021	transcription start site region 80021	1538 bp upstream
Tssr80022	transcription start site region 80022	1572 bp upstream