rs225661108 SNP Detail

Summary

• ID
  rs225661108
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72594972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTAAGGT TTATTTTATT TATTATATGT GAGTACACTG
  TAGCTGTCAC CAGACACTGG AAGAGGGAAT CAGGTCTTGT TACAGATGAT TGTGAGCCAC
  G
  ATATGGTTGC TGGGATTTGA GCTCAGTACC TCTGGAAGAG CAGTCAGTGG TGCTCTTAAC
  TGCTGAGTTA TCACTCCAGC CCAAGCAACA CATTCTTAT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321822462	CHEV_6_72567983	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225661108					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72594972 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	794 bp distal
Gm20536	predicted gene 20536	1799 bp downstream
Gm67593	predicted gene, 67593	within coordinates
Rr399708	regulatory region 399708	1046 bp downstream
Rr632244	regulatory region 632244	1162 bp distal
Rr632245	regulatory region 632245	1232 bp distal
Rr632246	regulatory region 632246	1000 bp distal
Rr632247	regulatory region 632247	499 bp distal
Rr632248	regulatory region 632248	1414 bp proximal
Tgoln1	trans-golgi network protein	989 bp upstream
Tssr57152	transcription start site region 57152	1071 bp downstream
Tssr61478	transcription start site region 61478	1233 bp upstream