rs225599389 SNP Detail

Summary

• ID
  rs225599389
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148718200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGT ATGAGGCTGG GTATGATGGC
  K
  CATGTATTTA ATTCCAGTAC ATGGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320557238	CHEV_2_148702016	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225599389					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148718200 () rs orientation: forward

Symbol	Name	Function Class
Cst3	cystatin C	768 bp upstream
Rr374041	regulatory region 374041	73 bp downstream
Rr566976	regulatory region 566976	727 bp distal
Rr566977	regulatory region 566977	214 bp distal
Rr566978	regulatory region 566978	799 bp proximal
Tssr20682	transcription start site region 20682	1109 bp downstream
Tssr20683	transcription start site region 20683	1024 bp downstream
Tssr26688	transcription start site region 26688	836 bp upstream
Tssr26689	transcription start site region 26689	792 bp upstream
Tssr26690	transcription start site region 26690	664 bp upstream
Tssr26691	transcription start site region 26691	639 bp upstream