rs225587722 SNP Detail

Summary

• ID
  rs225587722
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38343301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGACAAA AATACAGCAT
  AGCCAGCCCT GTTTAAAATC TCTGTAGTTA AAGTTGATTG GTTGTGTTCC TAAAAGTCAT
  TAAAATAACT TCTAAATATA AATTGCCTTG GCACAGAAAT ACTTTCTTAG GTAAGTATTT
  ATCATTTCTT CAGGGAAAAA AAATTTCTTG TTGACCAGTT GCACAGAAGT ACTTTGCCTT
  K
  CCTTCTAAAC GCAGAAAGAG GGGGAGGGGA GGGGGAGGTG GGAAGAGGAA GGATCATTTT
  CCCTCTGTGT GTGTAAGTAA TGAGAGCAAA GGAAAGAATG CAGGCAGGGT CATTGAGTTC
  CTGAGTCTGT GATATTTACA GAGTCAAGGA TTTCTGCTGG GTCTTTTGCT TGTCTCTGCA
  GGGAGAAAAT CTGAGAGGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SPRET/EiJ	SWR/J
ss357605185	MGP_WTSI_3_38188074	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	G	G	T	G	T	G	G	G	G	G	G	G	G	T	G	G	G	T	G	T	T	T	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SPRET/EiJ	SWR/J
rs225587722					SNP	T	G	G	G	T	G	T	G	G	G	G	G	G	G	G	T	G	G	G	T	G	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357605185	MGP_WTSI_3_38188074	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38343301 () rs orientation: forward

Symbol	Name	Function Class
Rr575656	regulatory region 575656	within coordinates