rs225567172 SNP Detail

Summary

• ID
  rs225567172
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89163426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttgtttgtt ttttgagaca gggtttctct
  gtgtatccct ggctgtccta gaacttactc tgtagaccag gctggcctcg aactcagaaa
  tctgcctgcc tctgcctccc aagtgctggg atcaaaggcg tgcgctaaca ctgcccagcA
  W
  GTTTCTGTtg tggatcagca tcatctgaac agctgaaggt cagatagtta gaacaagaca
  tggctgtccc ttagtgggag ggagctgagc aggaacacag cctctggact tgagctgaaa
  tactggaact ttcctgggcc ttggcctgct                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320836914	CHEV_3_89060041	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225567172					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89163426 () rs orientation: forward

Symbol	Name	Function Class
Rr580007	regulatory region 580007	1109 bp distal
Rr580008	regulatory region 580008	830 bp distal
Rr580009	regulatory region 580009	668 bp distal
Rr580010	regulatory region 580010	36 bp proximal