rs225536793 SNP Detail

Summary

• ID
  rs225536793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107136588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATGCAAA GACCTGGGTA
  TCAAAGTTGC TTTCCATCTT GTTTATTCTC TCTCTGTCTC TGTCTCTTTC TCTCTCTGTC
  TCTTTCTCTC TCTGTCTCTG TCTCTCTGTG TCTGTGTGTG TATGTGTGTG TGTGTGTGTC
  TGTGTCTGTG TGTCTGTGTG GTGTGTGCAC TATTGTGTTC ATGGAAGTCT GAGAACGACT
  Y
  TCAGGGGTTG ATTCTCTTCC AACCATCCTG TGGGATCCAA GGTGTAAACT CAAGCTATCA
  GACATGCATT CACACGCCTC TACTCATTGA CCTGTCCCGC CAGGCCTCCG CTTTGTTTAC
  AAAGCAGGAT TTCTCACTCT TACCTGGAGC TTGCTGATTC AGCTTGGCTG ACTGGCCAGC
  TAGCTAGCCC CAAGGGTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864768	CHEV_3_107032190	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225536793					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107136588 () rs orientation: forward

Symbol	Name	Function Class
A630076J17Rik	RIKEN cDNA A630076J17 gene	1342 bp upstream
Rr582941	regulatory region 582941	32 bp proximal
Rr582942	regulatory region 582942	852 bp proximal
Rr582943	regulatory region 582943	1353 bp proximal
Tssr31190	transcription start site region 31190	1184 bp upstream
Tssr31191	transcription start site region 31191	1336 bp upstream