rs225520647 SNP Detail

Summary

• ID
  rs225520647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:82938430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAACAGC TTCAACAGGT
  CATCGCTAAA GAATTGCTTC CTACAAAAGA CAGGCAGTAC TTGCCAGCAC TAAAAATGTC
  TCCAGTTCCC GACTTGGTTC CCGGAAGTTT TAAGAGCCAG CTTCAGGAGG CCCCTCCAGA
  GTGGAAGGCA TTAACAGAAA TGCGGCAGAT GAGAATGGAG CTGGAGAGAC CTGGGAAGGA
  Y
  GGGGGTTCGC GAGGAGATTC ACCAGGAGAC TCGCGGGGAG ATTCTAGAGG GGACTTTGCA
  ACACGTGGAC CAGGGTCAAA GGCAGAAAAC CCCACGAACC CTGGACCTGG TGGATCTGGG
  TATTGGCGTC CTGGGAACTC CGGGTCTGGA AGTGATGGAA ATCGGAACCC TGGGACCACG
  GGGTCTGATG GCACTGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358676698	MGP_WTSI_3_82835045	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225520647					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358676698	MGP_WTSI_3_82835045	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82938430 () rs orientation: forward

Symbol	Name	Function Class
Fga	fibrinogen alpha chain	Coding-Synonymous
Rr375250	regulatory region 375250	within coordinates
Tssr917	transcription start site region 917	575 bp upstream
Tssr29665	transcription start site region 29665	1987 bp downstream
Tssr29666	transcription start site region 29666	1951 bp downstream
Tssr29667	transcription start site region 29667	1908 bp downstream
Tssr29668	transcription start site region 29668	914 bp downstream
Tssr29669	transcription start site region 29669	864 bp downstream
Tssr29670	transcription start site region 29670	827 bp downstream
Tssr29671	transcription start site region 29671	278 bp downstream
Tssr29672	transcription start site region 29672	185 bp downstream
Tssr29673	transcription start site region 29673	138 bp downstream
Tssr29674	transcription start site region 29674	104 bp downstream
Tssr29675	transcription start site region 29675	98 bp downstream
Tssr29676	transcription start site region 29676	84 bp downstream
Tssr29677	transcription start site region 29677	69 bp downstream
Tssr29678	transcription start site region 29678	3 bp upstream
Tssr29679	transcription start site region 29679	47 bp upstream
Tssr29680	transcription start site region 29680	70 bp upstream
Tssr29681	transcription start site region 29681	172 bp upstream
Tssr29682	transcription start site region 29682	195 bp upstream
Tssr29683	transcription start site region 29683	238 bp upstream
Tssr29684	transcription start site region 29684	263 bp upstream
Tssr29685	transcription start site region 29685	304 bp upstream
Tssr29686	transcription start site region 29686	370 bp upstream
Tssr29687	transcription start site region 29687	468 bp upstream
Tssr29688	transcription start site region 29688	492 bp upstream
Tssr29689	transcription start site region 29689	518 bp upstream
Tssr29690	transcription start site region 29690	548 bp upstream
Tssr29691	transcription start site region 29691	594 bp upstream
Tssr29692	transcription start site region 29692	610 bp upstream
Tssr29693	transcription start site region 29693	641 bp upstream
Tssr29694	transcription start site region 29694	674 bp upstream
Tssr29695	transcription start site region 29695	700 bp upstream
Tssr29696	transcription start site region 29696	713 bp upstream
Tssr29697	transcription start site region 29697	737 bp upstream
Tssr29698	transcription start site region 29698	874 bp upstream
Tssr29699	transcription start site region 29699	956 bp upstream
Tssr29700	transcription start site region 29700	969 bp upstream
Tssr29701	transcription start site region 29701	1001 bp upstream
Tssr33800	transcription start site region 33800	within coordinates
Tssr33801	transcription start site region 33801	324 bp downstream
Tssr33802	transcription start site region 33802	460 bp downstream