rs225502640 SNP Detail

Summary

• ID
  rs225502640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164248956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTGTGT ATTTTGTCTA
  CATGCATGCC TGTACACTAG AAGAGGGCAT TGGATCCCAT TACAGATGGT TGTGAGCCAC
  CATGTGGTTG CTGGGAGTTG AACTCAGAAC CTCTGGAAGA GCAGCCAGGG CTCTTAACTG
  CTGAGCCGTC TCTCCTACCC CTTGACTGTT ATTTTTGTTG TTGATGTTGG TGGTGGTTCT
  R
  GTGCTGGTGG TGATACTGGT GCTGTGTGGA TGTATAGATG CCACGATTCC TGTGGAGGTA
  AGAGGATAAT GTGTGCAGTT AGGTGTACAG TTGGTTCTCT TCCTCCTTTT GATGGGTTCT
  GGGCATTGAA GTCAAGTTAT CATGCTTGCC TCAGCAAGCC TTTTATCCAC TGAGCCACCT
  GTTACTTAAG AACTAATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605788	CHEV_2_164232536	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225502640					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164248956 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12658	CpG island 12658			806 bp proximal
Matn4	matrilin 4			1876 bp upstream
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
Rr569599	regulatory region 569599			1932 bp distal
Rr569600	regulatory region 569600			1643 bp distal
Rr569601	regulatory region 569601			640 bp proximal
Rr569602	regulatory region 569602			862 bp proximal
Tssr21580	transcription start site region 21580			1739 bp downstream