rs225489445 SNP Detail

Summary

• ID
  rs225489445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132292144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAGCAGA TGCCTCTACC
  TACTGAGCTA TCTCACCATC CCTGACTTTT ATTTTACATC GAGGTCTTAC ACACTGCCGA
  GGTTGGCTTT GAACTCACTG TGTAGCACAG GCAACCTTGG ATTATTGTAT GTGTATACAA
  GTACGAATGC TCACTGTGTG CATGCCTGGC GCCTTGGGGT TCAGAAGAGG GGGTCAGATC
  Y
  CTGGAACTGG AGTTCGGAGA TGATTGTGAG CCACTGTGTG GATGCTGGGA ACAAAACCTG
  GGTCCTTTCC AAGAGTGTCC AGGGCGCTTA ATCCCTGTGC CATCTCTCCA TCCTCTAGTC
  TTAGTCCTTA ACCCTCTCTC AGCCTTCTGA GTGGTAGGTA TTTCTGGCCT GTGATCAGGT
  GCTGGGACAC TCCAAGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321334505	CHEV_4_132120748	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225489445					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132292144 () rs orientation: forward

Symbol	Name	Function Class
Ptafr	platelet-activating factor receptor	Intron
Rr601015	regulatory region 601015	756 bp distal
Rr601016	regulatory region 601016	536 bp distal
Rr601017	regulatory region 601017	708 bp distal
Rr601018	regulatory region 601018	553 bp distal
Rr601019	regulatory region 601019	658 bp proximal
Tssr39381	transcription start site region 39381	1352 bp downstream
Tssr39382	transcription start site region 39382	1323 bp downstream
Tssr39383	transcription start site region 39383	1240 bp downstream
Tssr39384	transcription start site region 39384	1205 bp downstream
Tssr39385	transcription start site region 39385	1096 bp downstream
Tssr39386	transcription start site region 39386	757 bp downstream
Tssr39387	transcription start site region 39387	740 bp downstream
Tssr39388	transcription start site region 39388	623 bp downstream
Tssr39389	transcription start site region 39389	527 bp upstream