rs225488822 SNP Detail

Summary

• ID
  rs225488822
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:67511462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTTGGAAA TGCCTTTTCT
  TATACAAACG ATGGCAGATG AACACTGCGC AGGATCAATT AGTGAGTGAA CTGCTCTTCC
  TTTCCTGAAG GTTGGGAGGC AGGGAGCGAA TGGGTCACCA ACAACCCGGA TAGCCAAATC
  GCCGCTTTCC CATTTCAAAC CGTTTAAGTC TTTGGGTAGA TTCAAGTCGC TGGGAAACAA
  S
  TGGGCTGCCT GGCACTAGCT TCTTAACCAA GCTATCTAGC CTTTGCTTAA CTCTCCCGGT
  CAGGTTTCCA GTGACTAGAC AAGGAATTTC AGAAATGCGT CCTTAAAAAA CCAAGGGCGA
  GGGAGGTGAC CTGAGCTCAG CATCTAGAGA ACTTGTTTGT GGAGAGAGAA GGAAGAGGTC
  AAAGCTGGGA GGAAAATTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812329	CHEV_6_67484472	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225488822					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67511462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17511	CpG island 17511	1070 bp distal
Cpgi17512	CpG island 17512	172 bp proximal
Gm42889	predicted gene 42889	within coordinates
Gm67034	predicted gene, 67034	1172 bp upstream
Rr368087	regulatory region 368087	1105 bp downstream
Rr631666	regulatory region 631666	1183 bp distal
Rr631667	regulatory region 631667	682 bp distal
Rr631668	regulatory region 631668	313 bp proximal
Rr631669	regulatory region 631669	756 bp proximal
Rr631670	regulatory region 631670	1307 bp proximal
Rr631671	regulatory region 631671	1308 bp proximal
Rr631672	regulatory region 631672	1480 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	mRNA-UTR
Tssr1867	transcription start site region 1867	1937 bp upstream
Tssr1868	transcription start site region 1868	1901 bp upstream
Tssr1869	transcription start site region 1869	1140 bp upstream
Tssr1870	transcription start site region 1870	1009 bp downstream
Tssr1871	transcription start site region 1871	660 bp downstream
Tssr1872	transcription start site region 1872	294 bp downstream
Tssr61254	transcription start site region 61254	815 bp upstream
Tssr61255	transcription start site region 61255	252 bp downstream
Tssr61256	transcription start site region 61256	716 bp downstream
Tssr61257	transcription start site region 61257	1207 bp downstream
Tssr61258	transcription start site region 61258	1305 bp downstream
Tssr61259	transcription start site region 61259	1350 bp downstream