rs225453453 SNP Detail

Summary

• ID
  rs225453453
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54477982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCTACTC CCACAGTGGG
  ATGTACCCTT TAATATTAAT TAGAAATCTA GAAAATGCCC TTTAGACAAA CCCATAGGCC
  AATCCGATCC AGGTAACCTC AGCTAAGGTT CCCTCTTCCG GGACGAGTTT GAGTCACGTT
  GACAATAAAA AACAACAATA TGGAGCTTCC CTGAGAAAAT GGAAAACTTG TCTCATATGA
  W
  TTGGTAGCTA TTATGAAGCA AGTCAAACTC TATTTCCTCT TTAATACATG TTTTTCTTTA
  TGTCTATGAC CGCTTGCCTG CCATGCATGT CTGTGCACCA TGTACAGGCA GTGCCTGTCG
  AGGCCAGAAG AGGGCGATAG ATACCCTACC CAGTTCTCTG TAAGAGCAGC CCCTCTCCTG
  GCCCAACCTA TGTTATTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320771959	CHEV_3_54374483	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225453453					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54477982 () rs orientation: forward

Symbol	Name	Function Class
Gm65161	predicted gene, 65161	160 bp upstream
Rr576809	regulatory region 576809	120 bp proximal
Tssr29130	transcription start site region 29130	644 bp downstream