rs225452773 SNP Detail

Summary

• ID
  rs225452773
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137336703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTAGAGA GTTTGTCAAA
  TAAGCAATAT CTGTTTTTGT AAAGGTCCAA AAGGAGCTAT AAAGTACCAA GTAGTCTGCA
  CCTTAACTTA AGTTTAGAGC ACTGTGTGCT AGTTTGTGTG TAAAGGTGTG TGTGCTTGGT
  TATAGGCAGC ACATGCCCCT CCCTCCATGT TTCTGCTTTT TCTATATTCT GAGAGCTCCC
  W
  TCAGTGGAGT TGCTCTGACG AGTGTGATAG ACGAGCTTGG AGCACACAAC TTCCTGTCTT
  TTAAACAGTG TTGAGTTTGC ATTCTCTCTT GTACACATTA GCAGTCGGAA GCCATTAATC
  ACATTGAGTT TATCCATCTA AAGACGTCCT GAGTGTTCAC TTAGTGTTGT ATTCTTAGTG
  TTGTATTAAG CACGGTGGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321365623	CHEV_4_137165307	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225452773					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137336703 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr602660	regulatory region 602660			159 bp proximal
Tssr39763	transcription start site region 39763			1279 bp upstream
Usp48	ubiquitin specific peptidase 48			Intron
				Noncoding-Transcript-Variant