rs225445341 SNP Detail

Summary

• ID
  rs225445341
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:94260702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATAAAAC AAACTTTCCG
  GGCTCCGTGA AGAGCCCTGC ACGGGCGCCC GCGAGCTTTG TTTGCATTCC GGTGCCTCCG
  GGTCCGCGTT CCGGCGCCGA CCGCGCTCCC GGGACCAGAG TCCACTCCGG CGCCGCCCGG
  GCCCGCTCTC CGCTCCGCGG CTCTCTCCAC ACACGCCGCG CCTGCTCCGC GCCGGCCGGC
  S
  GCTCCTCAGC GCGAGGGAAG CCCTTTCCAA GCTAGTTGCC GGGAGCCCTG GAGACGCGAC
  GGCGCGGGGC GGGGGTGAGG GGACGCGAGG GAAGTGGCCG CGGCCCCTTT AAGCAGATAC
  AAAGGCTCGG CTTGTTTTGT TACAGTTCAT TCTACTCCGC GCGGCGGAGC GCAGCGGCCG
  GCTGGAGAGG AGACGCGCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321866893	CHEV_6_94233715	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225445341					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94260702 () rs orientation: forward

Symbol	Name	Function Class
Gm31661	predicted gene, 31661	290 bp upstream
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	mRNA-UTR
Rr634854	regulatory region 634854	1253 bp distal
Rr634855	regulatory region 634855	722 bp distal
Rr634856	regulatory region 634856	within coordinates
Rr634857	regulatory region 634857	186 bp proximal
Rr634858	regulatory region 634858	356 bp proximal
Rr634859	regulatory region 634859	857 bp proximal
Tssr62172	transcription start site region 62172	180 bp upstream
Tssr62173	transcription start site region 62173	119 bp upstream
Tssr62174	transcription start site region 62174	20 bp downstream
Tssr62175	transcription start site region 62175	79 bp downstream
Tssr62176	transcription start site region 62176	114 bp downstream
Tssr62177	transcription start site region 62177	127 bp downstream