rs225439342 SNP Detail

Summary

• ID
  rs225439342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:5155565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCAGATGT AAGAGATTTT CAGGCTGCCT
  TAAACTGCCT GTGGTTTGTG GTGCTGGAAA GGAGAGAAAT GAGATTAAAC TTCATCTCAT
  CAACACAATC TGAAAAGATC ACGCAGAGGA CGAGCAATCA GAAACTTCTT CCGGAGCCGG
  R
  CTGGAGTGCT TTGTGCTTTC GTTTTAAGGT GACGTCATAT TAAGCTTGTT GGAAGACCAT
  GATTAAGGTC AAATAATATT TGAGGAAGAA CAAAAATAAG AGAAAACGTG TTTGGCTCTC
  TTCTGAAGCA TCCTTATTGT GTTGGCTTAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320637650	CHEV_3_5090505	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225439342					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5155565 () rs orientation: forward

Symbol	Name	Function Class
Gm17308	predicted gene, 17308	within coordinates
Rr573165	regulatory region 573165	1277 bp distal
Rr573166	regulatory region 573166	553 bp distal
Rr573167	regulatory region 573167	219 bp distal
Rr573168	regulatory region 573168	within coordinates
Tssr28264	transcription start site region 28264	190 bp downstream