rs225371005 SNP Detail

Summary

• ID
  rs225371005
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68951357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGATCC TTTGTTATTC
  TAAAAGTAAA ACAATTTAAT GTTTCAGATT TTGCCTGCAG TAAATATTTC ATCTTTAAAG
  TCCCAACCAT TTCCACACAA AGGACTTTTT ACAACATAAC GAATCTCTGA CTCTGGACAA
  GATTAACCAA TGATGGGAAC TAAACACTCA TAGTTTGGTT TGGTGGGTTT TTTGAGACTA
  W
  TTTTGTAGTC CTCACTGACG ACCTGGAACG CACAGGAGAG CTTGCTGCCT CTGTCTGCCC
  CCATGCTGGG GTTACAGGCG TGCACGTTCA TGCCCCGCTT CAAAGTTTTA TTTAAACTCA
  GCAAGACGAC TAGAAATATC CTCGCGCGTA GATATCCCCA GCTCGAAACT ACGTTAAATT
  ATTCCCATCA ACACATTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358313991	MGP_WTSI_3_68847946	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225371005					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358313991	MGP_WTSI_3_68847946	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68951357 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13256	CpG island 13256			37 bp proximal
Gm65005	predicted gene, 65005			826 bp upstream
Rr578117	regulatory region 578117			1487 bp distal
Rr578118	regulatory region 578118			within coordinates
Rr578119	regulatory region 578119			721 bp proximal
Rr578120	regulatory region 578120			858 bp proximal
Rr578121	regulatory region 578121			1109 bp proximal
Rr578122	regulatory region 578122			1319 bp proximal
Trim59	tripartite motif-containing 59			Intron
				Noncoding-Transcript-Variant
Tssr29529	transcription start site region 29529			1052 bp upstream
Tssr29530	transcription start site region 29530			1094 bp upstream
Tssr33523	transcription start site region 33523			626 bp downstream
Tssr33524	transcription start site region 33524			636 bp downstream
Tssr33525	transcription start site region 33525			673 bp downstream
Tssr33526	transcription start site region 33526			939 bp downstream
Tssr33527	transcription start site region 33527			961 bp downstream