rs225351937 SNP Detail

Summary

• ID
  rs225351937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143908356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTCCTC CCAGCGCCCG
  CCTCCGCCCG CTCCTCCCGC TGCCGCCCGC CTCCAGCAAA TGAGGGTCAA ACCCACCCAC
  CGCCGCGCCC GGCCCCTCCC CAGCCCCCGC CGAGCCCCGC GAGCCAGCCG CGGGCCGCTG
  GAGGTGGCCG CCCCGCCGCA GCCACGTTCC CTCCCGAGCT CTGCCTAGGG AAGTGAGGGT
  R
  CAATTCACAA GTTGCAAATA GTTCGGGGTT TCGGCAAGGC CAGGGCTGGG GAGAGAGGGG
  CGGGGGAGAG GAGGAAGGGA AAGGCCGAGG GGGAGATGTA GGTGGTGGGA GGGGAGGCAA
  GGTGGCGAGA GTGTTGGGGG GGGGGTGGGT GCTGGGTGTA AAGTTGCGAA ACTGGTTTTG
  CGTATTTTAA ACAGCACCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360062400	MGP_WTSI_3_143865559	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225351937					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360062400	MGP_WTSI_3_143865559	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143908356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13894	CpG island 13894	within coordinates
Cpgi13895	CpG island 13895	1955 bp proximal
Lmo4	LIM domain only 4	Intron
Rr375847	regulatory region 375847	1922 bp downstream
Rr406521	regulatory region 406521	419 bp proximal
Rr586598	regulatory region 586598	1982 bp distal
Rr586599	regulatory region 586599	589 bp distal
Rr586600	regulatory region 586600	within coordinates
Rr586601	regulatory region 586601	1292 bp proximal
Tssr35962	transcription start site region 35962	1652 bp upstream
Tssr35963	transcription start site region 35963	642 bp upstream
Tssr35964	transcription start site region 35964	626 bp upstream
Tssr35965	transcription start site region 35965	250 bp upstream
Tssr35966	transcription start site region 35966	228 bp upstream
Tssr35967	transcription start site region 35967	within coordinates