rs225340849 SNP Detail

Summary

• ID
  rs225340849
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22535651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTCACTT ATTCTCTGCA
  CATTGATTAG TTGGGAGTCC TGCCATTAAT AGTCACCTAC TGCAAACAGC TCTCTAACCA
  AGGGCAAGAG CAGCATTGCT CTACTGGCAT AAACACACAT TTAGAAATCA GATCCATATC
  CCATTCATAA AGAAAAGGGA GCATATTTCC CCTACACAGT CACTTCCTTT TTCCCCTCTA
  M
  AGTAAACCAT ACTAATTTGC ATTTATTAAC TATACAAATC AATGAGTTGG TTGTGGCACT
  CCAGGCATGG ACCAATATAC TTTGATCATC GTCATCCTCT ATGTTCCCCT TTCTCTAACT
  CCAAGTCTTC TACTTTCACA TGTTTCCCCC AGTGGCACTG GCATGTTAAC TGCTGGTATC
  AGTTCTTATT TAGGCTTCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321765791	CHEV_6_22485652	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225340849					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22535651 () rs orientation: forward

Symbol	Name	Function Class
Rr627119	regulatory region 627119	1757 bp proximal
Rr627120	regulatory region 627120	1813 bp proximal