rs225332910 SNP Detail

Summary

• ID
  rs225332910
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50751545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTACTTTG AGCCATTTCA
  TCTCATTTTG ACTTACAGCC TCTGTGTCCT AACTACTAGG TTTTCTTCCA GCCATCCTGA
  GCACTTTCTT CATGCTAAAC TTGGTGACTG GGTCAGGCCA CTCCATGCAG AGTCAGGAAA
  CAAATCTGTG CTGAGGGGCC GGAAACATGG CTGGCTGGGG TGGAGCTGGG GAGGGGGGGG
  S
  GGGAGGTAGA GAGATTTTTG TATTCCCCTG ACTCGAAGAG GAGGCTGTTC TATGTGTTTC
  ATGTCTTTAT CTTGTCACAG TTCATGAAAT TGACATGGTC ACCTCCGTTC AGTAAGAAGA
  CATTGAGGCT CAGGGACAGT AACTAGCTTG TGCAAGGTCA CCTAAGCCTG TCAGTGACAA
  CTGAAAAAAT TAAGTCAGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368275199	MGP_WTSI_6_50724564	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	C	C	G	G	C	G	G	G	G	G	C	G	C	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225332910					SNP	G	G	G	G	G	G	C	C	G	G	C	G	G	G	G	G	C	G	C	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368275199	MGP_WTSI_6_50724564	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50751545 () rs orientation: forward

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	1550 bp upstream
Rr543	regulatory region 543	within coordinates
Rr630065	regulatory region 630065	1040 bp proximal
Rr630066	regulatory region 630066	1715 bp proximal