rs225302064 SNP Detail

Summary

• ID
  rs225302064
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41520677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCTCCGCA TCCCCGCTCC CGGCTCGGGC TTCACACCCG
  GGCTCCCCCT TCTGGGCGCG CGGGGGCGGC CGCACTCTCG GCGCTGGTGA ATTGCTGTGA
  C
  CAAACAACAA CAAAAAAGCG GGCGATTTAA ATGTGCCTTC GAAACCGGTT TGAGCTCGTC
  ATCTCTACGA GACCCATTTA AAGCAGCTTT AGGTGGCTT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320728796	CHEV_3_41370164	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225302064					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41520677 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13118	CpG island 13118			1944 bp distal
Cpgi13119	CpG island 13119			within coordinates
Jade1	jade family PHD finger 1			Intron
				Noncoding-Transcript-Variant
Rr575969	regulatory region 575969			1312 bp distal
Rr575970	regulatory region 575970			74 bp distal
Rr575971	regulatory region 575971			1021 bp distal
Rr575972	regulatory region 575972			449 bp distal
Rr575973	regulatory region 575973			within coordinates
Rr575974	regulatory region 575974			41 bp distal
Tssr29004	transcription start site region 29004			1336 bp downstream
Tssr29005	transcription start site region 29005			1309 bp downstream
Tssr29006	transcription start site region 29006			1234 bp downstream
Tssr33082	transcription start site region 33082			698 bp upstream